PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_C77596863.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 570aa    MW: 61896.5 Da    PI: 5.33
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_C77596863.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06305326426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                            +lC+f++  G C+ G+ CkF+H+
  Traes_3DL_C77596863.1 305 KLCHFYMH-GKCQQGNACKFSHD 326
                            79**8888.*************7 PP

2zf-CCCH18.44e-06332354225
                            -S---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                            k ++C +far G C  Gd C++ H
  Traes_3DL_C77596863.1 332 KSKPCTHFAR-GSCLKGDDCPYDH 354
                            6789******.************* PP

3zf-CCCH22.32.4e-07360381526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f ++G C +Gd+CkF+H+
  Traes_3DL_C77596863.1 360 PCHNFVENGMCFRGDKCKFSHV 381
                            7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187301328IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6302326IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4305326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4329355IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5330356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281330357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5332355IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037358382IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6359382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4360380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864360383IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4360381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MEHQVAGGQX RYMEHQVAGV QRVEGVTDMV VGGNVCRETV ALLEELGAED VLRSMKDCLE  60
GEVDELAEPG VVVVNDDEHL LLDTMMTNFS GLIADASGGT TSMLNYGVSG GEPHNDGNIA  120
EGVKELGAGT EEDRPMGDSD QHSVDGGVVE EGEIEGDMQA LDVDESDDSE LEDADDEELG  180
EDFANRVLGE NESSGQDIRC LNLLSTPKIK GTSDLVLNKE GYIKDDALKH VTRAQAVSYD  240
EIVEWNETPL PDTEAPKPGK RKRHLTEERK AKKTKNKRVK RAQQRIADGV KRLKLAPVIK  300
PKPVKLCHFY MHGKCQQGNA CKFSHDTTPL TKSKPCTHFA RGSCLKGDDC PYDHELSKYP  360
CHNFVENGMC FRGDKCKFSH VVPTADGPSK PDAKKSDASL VSEKPGREQT SSQKASTVHD  420
GERVTSAPTK HYSILKNLAG ISVNALKAST GTPKGVQFRP SSKDRSNSSM LHQDALPIEK  480
HMYTNGSKHQ NFGGPQAEEG DKNGIPNKQR SAPLFDEKNS SKEASSHPSS DPERTSLPTG  540
STTVLGSLST QHEVSEASRI LQEFLFGAGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658510.0AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231935.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_010231934.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
RefseqXP_003569232.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLW5DDI60.0W5DDI6_WHEAT; Uncharacterized protein
STRINGMLOC_52106.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.23e-07C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]